PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ZF-HD
Protein Properties Length: 244aa    MW: 27221.2 Da    PI: 6.791
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61017.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.13.3e-3148103258
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  +k+rY+eClkNhA+ +Ggha+DGCgEf+++ geegt ++lkCaAC CHRnFHRre++
   EPS61017.1  48 AKTRYRECLKNHAVGIGGHALDGCGEFIAA-GEEGTLESLKCAACSCHRNFHRREND 103
                  5789*************************9.999********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2133103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.7E-2950102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.7E-2951101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.45352101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.95E-21168241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-31173242IPR009057Homeodomain-like
TIGRFAMsTIGR015656.0E-27182238IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEFEDQEGEE IGVEEDCNHD ELPGNSDDVR LTPAKMAAQP ESPPSSHAKT RYRECLKNHA  60
VGIGGHALDG CGEFIAAGEE GTLESLKCAA CSCHRNFHRR ENDGGVPFNF HHHQQQLLLA  120
HHPHAHFGYR GPSGYLHLTP PQNRAPPLLA LPSSSGGGAP AGGSRDEMED YYSNPSSSGG  180
GKKRFRTKFT QEQKDKMLNF SERLGWRIQK QDEELVQQFC HEVGIKRHVL KVWMHNNKHT  240
LGEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-251832401875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097503.11e-114PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotA2Z2593e-69ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLS8DMV20.0S8DMV2_9LAMI; Uncharacterized protein (Fragment)
STRINGGLYMA02G04550.25e-84(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.18e-64homeobox protein 22
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]